Tag Archives: natural

The Question of Death


Death’s Dance

In the film, Questioning Darwin, it is asked of ‘Darwinists’, “How does evolution deal with death?”

I have to admit, I don’t know what this question really means.  Is he asking why there is death? What happens after death?

Several people texted just this question during the live broadcast of the Nye / Ham debate and I didn’t understand it then either. In that context, they had posed this question as something of an experimental challenge to evolutionists and I interpreted it as meaning … ‘ Just wait until you die, heretic. Then you’ll see who’s right.’ Perhaps I had been to quick to this conclusion ?

If there is anyone out there who can explain just what this means, please let me know. Right now it’s nothing but an inside joke that I don’t get.


Posted by on February 24, 2014 in Uncategorized


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All in a kerfuffle

I’m all bent out of sorts since I decided to write about the green coffee extract paper popularized by Dr. Oz. 

Here’s the problem: in my last post I attempted to unpack the data presented in the article describing a weight loss trial using this supplement. Yet, the closer I examined the data, the more clear it was to me that the data presented in that paper does not support any conclusions.

This does not mean that the supplement is effective or not. It doesn’t even mean that the group is lacking in data that would answer the question. It merely means that the numbers they present and the descriptions of their methods do not allow one to scrutinize the data in a way that supports or refutes their claims.

ImageFor anyone interested in a fun discussion of statistics and what they mean, I strongly recommend the classic text, How to Lie with Statistics, by Darrell Huff.It’s a bit out of date, but still a lot of fun to read and educational for those who have not spent much time analyzing figures.

One thing the Mr. Huff’s book does well is brings the reader into the discussion of data and how to present it. A lot of his focus is on how advertisers manipulate their graphs and language in order to obfuscate the truth.

I don’t think this coffee extract paper is intentionally obfuscating the truth, rather, I think the confusion comes from an inability of the authors to present their data clearly (even to themselves perhaps). I’ve worked in a number of labs with a number of scientists in my life and I can say with conviction that not all scientists ability to analyze their data is the equal. In fact, I have seen a number of presentations where the presenter clearly did not understand the results of their own experiments. I can say that sometimes I have not understood my own data until presenting it before others allowed us to analyze it together (i.e. I am not exempt from this error).

I would love to have the opportunity to examine the raw data from these experiments to determine if they really do address the question – and whether, once addressed, the question is answered. I’m going to appeal to both the journal and the authors for more clarification on this and will report my findings here. 


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Posted by on July 23, 2013 in Uncategorized


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Another old essay – Morgan and Memes

This essay was originally published in the Osawatomie newspaper (The Graphic?) a year or two ago. It was prompted by an article in my local newspaper that showed how two ideas that have no logical connection can sometimes appear to be intimately ‘linked’ to one another.

Morgan and Memes                                                                                           

Thomas Hunt Morgan in the Fly Room

In the early 20th century, a scientist at Columbia University, named Thomas Hunt Morgan did work establishing the connection between the observations of Gregor Mendel and some lesser known scientists, Flemming, Sutton and Boveri. Mendel, an Austrian monk, was the first naturalist to see deep into the workings of nature and establish a clear, testable theory of how inheritance operates in organisms of all types. Trained in mathematics, Mendel saw that if each trait he observed was controlled by two ‘factors’ (one from each parent,) then inheritance followed a predictable pattern.

In his laboratory in Germany, totally unaware of Mendel’s work, Walther Flemming watched and documented the precise orchestration of cell division under the microscope. What he saw, less well known than Mendel’s work, was how chromosomes seem to form as threads in the cell that group along the center line of a cell before splitting and separating into each of the daughter cells formed by division. Sutton and Boveri saw the connection between these sorting chromosomes and Mendel’s ‘factors,’ but could not finish connecting the dots. Hunt’s conclusion, which seems so obvious now, was that chromosomes carry genes. To prove this he tracked two special chromosomes, X and Y and found that they determined the sex of the organism. Like humans, when flies had two X chromosomes, they were female; one X and one Y and they were male. Chromosomes were controlling the sex of the organism. This conclusion changed the way genetics was studied for years to come.

One thought that beguiled him though, was that Mendel’s work predicted that all genes sorted independently, but there were only so many chromosomes, and many, many genes. This was troubling because Mendel’s work was otherwise very clear and stood up to rigorous testing, yet it was inconsistent with what he saw with chromosomes. Mendel said that all genes are randomly inherited – and here he was, working with fruit flies and finding that it just couldn’t be true with so many genes and so few chromosomes. To skip the details, Morgan, and his lab members eventually discovered that chromosomes are tricky – and sticky. The two sets of chromosomes you get from each of your parents pair up and swap bits promiscuously. This swapping, or ‘crossing over,’ imitated randomness in all genes except those that were very close together. And so, while most genes adhered to Mendel’s law of independent assortment, those genes that lie close together on the chromosomes travel together and can be seen as traits that go hand-in-hand down the generations.

In 1976, Richard Dawkins, wrote “The Selfish Gene” in which he buried a nifty little idea. He proposed that thoughts are like genes- he called them memes– that get passed along from one person to the next, taking on a life of their own in a sort of world-wide game of telephone. He has written often about this idea, which is an interesting analogy, but not altogether useful scientifically.

Nevertheless, I had the thought of memes in my head, and when I read an article about organic farming our local county paper, I suddenly realized that memes too travel together! In the article a farmer described her farm as organic and natural – all the things that I like to hear about. I was immediately excited and wanted to join her co-op to get food that was a little more a part of the earth and a little less a product of chemistry. But then I got to some ideas that just didn’t make sense to me – things that often travel with the less well informed members of the organic food crowd: She doesn’t vaccinate her animals – or her children. She went on to suggest that cancer and autism are causally linked to genetically modified organism (GMO) foods – a completely groundless hypothesis.

Two chains of Memes (Memosome?). Memes 1-3 are all linked in some way, Memes 4 and 5 are also linked to one another, but not to Memes 1-3.

Yet, I’ve seen these memes travelling together in the past without giving it as much thought, and here they are again: The natural food meme and science-makes-us-sick meme. On one hand I see the connection and agree, I don’t think GMO foods are natural and vaccines are a way of unnaturally generating immunity without being exposed to disease. But, GMO foods are not inherently unsafe. They simply put together traits that exist in nature, but in combinations that would take breeders eons to produce ‘naturally.’

I love to know that my food comes from a natural, organic farm. And I expect to pay more for food of that sort, mostly because it is not as abundant and does not take advantage of advances in science. Advances that make it possible to feed all the billions of people on this planet. Billions that could not all be fed without modern, scientific agriculture. But there is something wholesome about foods grown in this way: the great variety of fruits and vegetables with their subtly distinct flavors and colors. Like GMOs, vaccines are also something of an unnatural creation – unnatural creations that spare us from the all too natural world of smallpox, measles, poliomyelitis.

I don’t mean to impose my values on anyone, but I do think that it can be enlightening to consider what ‘natural’ means. There are many things from the past that we should not forget and good food is one of them, but we ought not to also forget the ravages of disease that once kept children from playing outside together in the summer months or made them deathly sick only to recover and lead a life blinded, paralyzed or otherwise retarded from exposure to all things natural in the world.

I don’t think that anyone leads an entirely consistent life, but we are intelligent creatures and we don’t have to accept anything without consideration. So take some time, examine what you believe in and see just what memes are in your head just catching a ride. Maybe there’s some cleaning out to do.

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Posted by on October 24, 2012 in Uncategorized


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